#ifndef __TRANS_DETECTION_H__
#define __TRANS_DETECTION_H__
#include "Matrix.h"
namespace Recon {
struct SearchPosition {
  Aurora::Matrix startSearch;
  Aurora::Matrix endSearch;
};
struct TimeWindowResult {
  Aurora::Matrix startSearch;
  Aurora::Matrix AscanBlockProcessed;
};

struct DetectTofResult {
  Aurora::Matrix tof;
  Aurora::Matrix sosValue;
};
Aurora::Matrix calculateAttenuation(const Aurora::Matrix &ascans,
                                    const Aurora::Matrix &startPos,
                                    const Aurora::Matrix &endPos,
                                    const Aurora::Matrix &ascansRef,
                                    const Aurora::Matrix &startPosRef,
                                    const Aurora::Matrix &endPosRef);

SearchPosition
calculateStarEndSearchPosition(const Aurora::Matrix &aVDistBlock,
                               double minSpeedOfSound, double maxSpeedOfSound,
                               double sampleRate, double maxSample,
                               const Aurora::Matrix &aVSosOffsetBlock,
                               double startOffset, double segmentLenOffset);

TimeWindowResult applyTimeWindowing(
    const Aurora::Matrix &AscanBlock, double sampleRate,
    const Aurora::Matrix &distBlock, const Aurora::Matrix &sosBlock,
    double expectedSOSWater, double startOffset, double segmentLenOffset,
    double minSpeedOfSound, double maxSpeedOfSound, bool gaussWindow);

Aurora::Matrix detectAttVectorized(const Aurora::Matrix &Ascan, const Aurora::Matrix &AscanRef,
                        const Aurora::Matrix &distRef,
                        const Aurora::Matrix &sosWaterRef,
                        const Aurora::Matrix &tof, int aScanReconstructionFrequency,
                        double offsetElectronic, int detectionWindowATT);

Aurora::Matrix detectTofVectorized(
        const Aurora::Matrix &AscanBlock, const Aurora::Matrix &AscanRefBlock,
        const Aurora::Matrix &distBlock, const Aurora::Matrix &distBlockRef,
        const Aurora::Matrix &sosWaterBlock,
        const Aurora::Matrix &sosWaterRefBlock, double expectedSOSWater,
        int useTimeWindowing, int aScanReconstructionFrequency,
        double offsetElectronic, int detectionWindowSOS, double minSpeedOfSound,
        double maxSpeedOfSound, bool gaussWindow) ;

} // namespace Recon

#endif // __DETECTION_H__