Update geometry info , measrementInfo for startReconstruction.

src/common/estimatePulseLength.cpp

@@ -0,0 +1,22 @@
+#include "estimatePulseLength.h"
+#include "Function1D.h"
+#include "Function2D.h"
+#include <cstddef>
+#include <vector>
+
+using namespace Aurora;
+
+double Recon::estimatePulseLength(const CeEstimatePulseLength& aCe, double aSampleFreq)
+{
+    Matrix value1 = abs(hilbert(aCe.ce));
+    double value2 = 0.05 * max(abs(hilbert(aCe.ce)),All)[0];
+    std::vector<size_t> t;
+    for(size_t i=0; i<value1.getDataSize(); ++i)
+    {
+        if(value1[i] > value2)
+        {
+            t.push_back(i);
+        }
+    }
+    return (t[t.size()-1] - t[0]) / aCe.ce_sf * aSampleFreq;
+}

src/common/estimatePulseLength.h

@@ -0,0 +1,17 @@
+#ifndef ESTIMATE_PULSE_LENGTH_H
+#define ESTIMATE_PULSE_LENGTH_H
+
+#include "Matrix.h"
+
+namespace Recon
+{
+    struct CeEstimatePulseLength
+    {
+        Aurora::Matrix ce;
+        double ce_sf;
+    };
+
+    double estimatePulseLength(const CeEstimatePulseLength& aCe, double aSampleFreq);
+}
+
+#endif

src/common/getGeometryInfo.cpp

@@ -192,13 +192,13 @@ void getApertureBoundingBox(GeometryInfo& aOutput)
 }
 }
 
-GeometryInfo Recon::getGeometryInfo(const Matrix& aMotorPos, const Matrix& aTransformationMatricesRef,
+GeometryInfo Recon::getGeometryInfo(const Matrix& aMotorPos, const Matrix& aTransformationMatrices,
                                     const Matrix aRlList, const Matrix aRnList, const Matrix aSlList, const Matrix aSnList)
 {
     GeometryInfo result;
     result.headTable = Recon::HEAD_TABLE;
     result.sensChar = loadSensitivity();
-    transformGeometry(aMotorPos, aTransformationMatricesRef, aRlList, aRnList, aSlList, aSnList, result);
+    transformGeometry(aMotorPos, aTransformationMatrices, aRlList, aRnList, aSlList, aSnList, result);
     getApertureBoundingBox(result);
     result.maxSL = emitterPositions.size();
     result.maxSN = emitterPositions[0].getDimSize(0);

src/common/getGeometryInfo.h

@@ -26,7 +26,7 @@ namespace Recon
         std::vector<Aurora::Matrix> receiverPositions;
     };
 
-    GeometryInfo getGeometryInfo(const Aurora::Matrix& aMotorPos, const Aurora::Matrix& aTransformationMatricesRef,
+    GeometryInfo getGeometryInfo(const Aurora::Matrix& aMotorPos, const Aurora::Matrix& aTransformationMatrices,
                                  const Aurora::Matrix aRlList, const Aurora::Matrix aRnList, const Aurora::Matrix aSlList, const Aurora::Matrix aSnList);
 }
 

src/common/getMeasurementMetaData.cpp

@@ -53,6 +53,8 @@ MeasurementInfo Recon::loadMeasurementInfos(Parser* aParser)
     result.Wavelength = 3;
     result.expectedAScanLength = result.numberSamples;
     result.rootMeasUniqueID = metaData.getMeasurementID();
+    result.dacDelay = metaData.getDacDelay();
+    result.filterByPass = metaData.getFilterByPass();
     if(result.Bandpassundersampling)
     {
         result.expectedAScanLength = reflectParams::aScanReconstructionFrequency / result.sampleRate * result.expectedAScanLength;

src/common/getMeasurementMetaData.h

@@ -20,6 +20,9 @@ namespace Recon
         int Wavelength;
         unsigned int expectedAScanLength;
         std::string rootMeasUniqueID;
+        double dacDelay;
+        double filterByPass;
+        Aurora::Matrix matchedFilter;
     };
 
     struct CEInfo