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Update geometry info , measrementInfo for startReconstruction.

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This commit is contained in:
sunwen
2023-05-19 10:28:22 +08:00
parent e5088ea657
commit 7088602b59
9 changed files with 168 additions and 17 deletions
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22
src/common/estimatePulseLength.cpp Normal file
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@@ -0,0 +1,22 @@
#include "estimatePulseLength.h"
#include "Function1D.h"
#include "Function2D.h"
#include <cstddef>
#include <vector>
using namespace Aurora;
double Recon::estimatePulseLength(const CeEstimatePulseLength& aCe, double aSampleFreq)
{
Matrix value1 = abs(hilbert(aCe.ce));
double value2 = 0.05 * max(abs(hilbert(aCe.ce)),All)[0];
std::vector<size_t> t;
for(size_t i=0; i<value1.getDataSize(); ++i)
{
if(value1[i] > value2)
{
t.push_back(i);
}
}
return (t[t.size()-1] - t[0]) / aCe.ce_sf * aSampleFreq;
}

17
src/common/estimatePulseLength.h Normal file
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@@ -0,0 +1,17 @@
#ifndef ESTIMATE_PULSE_LENGTH_H
#define ESTIMATE_PULSE_LENGTH_H
#include "Matrix.h"
namespace Recon
{
struct CeEstimatePulseLength
{
Aurora::Matrix ce;
double ce_sf;
};
double estimatePulseLength(const CeEstimatePulseLength& aCe, double aSampleFreq);
}
#endif

4
src/common/getGeometryInfo.cpp
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@@ -192,13 +192,13 @@ void getApertureBoundingBox(GeometryInfo& aOutput)
}
}
GeometryInfo Recon::getGeometryInfo(const Matrix& aMotorPos, const Matrix& aTransformationMatricesRef,
GeometryInfo Recon::getGeometryInfo(const Matrix& aMotorPos, const Matrix& aTransformationMatrices,
const Matrix aRlList, const Matrix aRnList, const Matrix aSlList, const Matrix aSnList)
{
GeometryInfo result;
result.headTable = Recon::HEAD_TABLE;
result.sensChar = loadSensitivity();
transformGeometry(aMotorPos, aTransformationMatricesRef, aRlList, aRnList, aSlList, aSnList, result);
transformGeometry(aMotorPos, aTransformationMatrices, aRlList, aRnList, aSlList, aSnList, result);
getApertureBoundingBox(result);
result.maxSL = emitterPositions.size();
result.maxSN = emitterPositions[0].getDimSize(0);

2
src/common/getGeometryInfo.h
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@@ -26,7 +26,7 @@ namespace Recon
std::vector<Aurora::Matrix> receiverPositions;
};
GeometryInfo getGeometryInfo(const Aurora::Matrix& aMotorPos, const Aurora::Matrix& aTransformationMatricesRef,
GeometryInfo getGeometryInfo(const Aurora::Matrix& aMotorPos, const Aurora::Matrix& aTransformationMatrices,
const Aurora::Matrix aRlList, const Aurora::Matrix aRnList, const Aurora::Matrix aSlList, const Aurora::Matrix aSnList);
}

2
src/common/getMeasurementMetaData.cpp
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@@ -53,6 +53,8 @@ MeasurementInfo Recon::loadMeasurementInfos(Parser* aParser)
result.Wavelength = 3;
result.expectedAScanLength = result.numberSamples;
result.rootMeasUniqueID = metaData.getMeasurementID();
result.dacDelay = metaData.getDacDelay();
result.filterByPass = metaData.getFilterByPass();
if(result.Bandpassundersampling)
{
result.expectedAScanLength = reflectParams::aScanReconstructionFrequency / result.sampleRate * result.expectedAScanLength;

3
src/common/getMeasurementMetaData.h
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@@ -20,6 +20,9 @@ namespace Recon
int Wavelength;
unsigned int expectedAScanLength;
std::string rootMeasUniqueID;
double dacDelay;
double filterByPass;
Aurora::Matrix matchedFilter;
};
struct CEInfo

31
src/config/config.h
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@@ -10,25 +10,25 @@ namespace Recon
{
//reconParams.measurementInfo.ce
static bool useCEMeasured = true;
static int removeOutliersFromCEMeasured = 1;
static bool removeOutliersFromCEMeasured = true;
static double offsetFilterEnabled = 6.9e-6;
static double offsetFilterDisabled = 1.2e-6;
//reconParams.measurementInfo.temp
static bool useTASTempComp = true;
static bool correctTASTemp = 1;
static //reconParams.hardwareSelection
int gpuSelectionList[8] = {0,1,2,3,4,5,6,7};
static //reconParams.dataInfo
int expectedAScanDataLength = 4000;
//reconParams.hardwareSelection
static Aurora::Matrix gpuSelectionList = Aurora::Matrix::fromRawData(new double[8]{0,1,2,3,4,5,6,7},8);
//reconParams.dataInfo
static int expectedAScanDataLength = 4000;
}
namespace reflectParams
{
//reflectParams.dataSelection
static double senderTasList[128]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128};//1~128
static double senderElementList[18]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18};//1~18
static double receiverTasList[128]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128};//1~128
static double receiverElementList[18]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18};//1~18
static Aurora::Matrix senderTasList = Aurora::Matrix::fromRawData(new double[128]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128},128);//1~128
static Aurora::Matrix senderElementList = Aurora::Matrix::fromRawData(new double[18]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18},18);//1~18
static Aurora::Matrix receiverTasList = Aurora::Matrix::fromRawData(new double[128]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128},128);//1~128
static Aurora::Matrix receiverElementList = Aurora::Matrix::fromRawData(new double[18]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18},18);//1~18
static Aurora::Matrix motorPos = Aurora::Matrix::fromRawData(new double[2]{1,2}, 2);
static int constricReflectionAngles = 1;
static int angleLowerLimit = 45;
@@ -64,7 +64,7 @@ namespace Recon
static int suppressSameHead = 1;
static int suppressSameHeadLength = 1500;
static int useCorrelation = 1;
static int matchedFilterCeAScan = 1;
static bool matchedFilterCeAScan = true;
static int windowLength = 10;
static int numThreads = 30;
static int expectedUSSpeedRange[2] = {1420,1600};
@@ -89,15 +89,16 @@ namespace Recon
namespace transParams
{
static Aurora::Matrix gpuSelectionList;
//transParams.dataSelection
static int verbose = 1;
static int saveRecon = 1;
static int saveDebugInfomation = 1;
//transParams.dataSelection
static double senderTasList[128]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128};//1~128
static double senderElementList[18]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18};//1~18
static double receiverTasList[128]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128};//1~128
static double receiverElementList[18]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18};//1~18
static Aurora::Matrix senderTasList = Aurora::Matrix::fromRawData(new double[128]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128},128);//1~128
static Aurora::Matrix senderElementList = Aurora::Matrix::fromRawData(new double[18]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18},18);//1~18
static Aurora::Matrix receiverTasList = Aurora::Matrix::fromRawData(new double[128]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128},128);//1~128
static Aurora::Matrix receiverElementList = Aurora::Matrix::fromRawData(new double[18]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18},18);//1~18
static Aurora::Matrix motorPos = Aurora::Matrix::fromRawData(new double[2]{1,2}, 2);
static int filterSensitivity = 1;
static double sensFilter = 0.3;
@@ -134,6 +135,8 @@ namespace Recon
static int maxSpeedOfSound = 1550;
static int detectionWindowSOS = 1;
static int detectionWindowATT = 50;
static double pulseLengthSamples = 0;
static double pulseLengthRefSamples = 0;
//transParams.rayTracing
static int bentReconstruction = 0;
static int bresenham = 1;

93
src/reflectionReconstruction/preprocessData/estimateOffset.cpp Normal file
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@@ -0,0 +1,93 @@
#include "estimateOffset.h"
#include "../../common/ceMatchedFilterHandling.h"
#include "Function.h"
#include "Function1D.h"
#include "Function2D.h"
#include "Matrix.h"
#include "src/config/config.h"
#include <cstddef>
using namespace Recon;
using namespace Aurora;
double Recon::estimateOffset(const MeasurementInfo aExpInfo, const CEInfo& aCe, const Aurora::Matrix& aMatchedFilter)
{
double offset = 0;
Matrix ce = aCe.ceRef;
double ceOffSet = aCe.ceRefOffSet;
Matrix ceMeasured;
if(aCe.measuredCEAvailable)
{
if(aCe.measuredCEUsed)
{
ceMeasured = real(ifft(aMatchedFilter));
}
else
{
ceMeasured = real(ifft(reviseMatchedFilter(aCe.ce, true)));
}
}
offset = offset + reflectParams::offsetElectronic;
if(!aCe.measuredCEUsed)
{
if(aCe.measuredCEAvailable && aCe.ceAvailable)
{
size_t column = ceMeasured.getDimSize(1);
size_t ceRows = ce.getDimSize(0);
double* offsetCEMeasuredData = Aurora::malloc(column);
for(int i=0; i<column; ++i)
{
Matrix corrCE = xcorr(ceMeasured($,i).toMatrix(), ce);
long row,column;
max(corrCE, FunctionDirection::All,row,column);
offsetCEMeasuredData[i] = row + 1;
offsetCEMeasuredData[i] = offsetCEMeasuredData[i] - ceRows;
}
Matrix offsetCEMeasured = Matrix::New(offsetCEMeasuredData, column);
offset = offset + median(offsetCEMeasured)[0] / reflectParams::aScanReconstructionFrequency;
// 2代
// if strcmpi(info.Hardware,'USCT3Dv2')
// offset = offset - CEOffset;
// CEOffset = 0;
// end
}
else
{
double dacDelay = aExpInfo.dacDelay;
double filterDisabled = aExpInfo.filterByPass;
double dacDelayInS = dacDelay / 10000000;
if(filterDisabled == 1)
{
offset += aCe.offsetFilterDisabled + dacDelayInS;
}
else
{
offset += aCe.offsetFilterEnabled + dacDelayInS;
}
}
}
//只对三代处理，Digitalfilterdelay为0；
// if (strcmp(info.Hardware,'USCT3Dv2')==1 && info.Bandpassundersampling==1) %%%3.3MHz Filter 208 Tabs
// Digitalfilterdelay=-(0.8e-6);
// %seconds
// elseif(strcmp(info.Hardware,'USCT3Dv2')==1) %%%%10 MHz 32 Tabs
// Digitalfilterdelay=-(4.67e-6 + 0.8e-6);
// %seconds
// elseif(strcmp(info.Hardware,'USCT3Dv3')==1)
double digitalfilterdelay = 0;
// else
// Digitalfilterdelay = 0;
// end
if (!aCe.measuredCEUsed)
{
offset += digitalfilterdelay;
offset += ceOffSet;
}
offset -= aExpInfo.EOffset;
return offset;
}

11
src/reflectionReconstruction/preprocessData/estimateOffset.h Normal file
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@@ -0,0 +1,11 @@
#ifndef ESTIMATE_OFFSET_H
#define ESTIMATE_OFFSET_H
#include "../../common/getMeasurementMetaData.h"
namespace Recon
{
double estimateOffset(const MeasurementInfo aExpInfo, const CEInfo& aCe, const Aurora::Matrix& aMatchedFilter);
}
#endif