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Read DICOM Image property (Spacing, transform matrix) into ExtendMedicalImageProperties

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This commit is contained in:
Krad
2022-05-05 16:00:07 +08:00
parent be8a1c8994
commit 37288e4fc4
2 changed files with 100 additions and 4 deletions
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103
src/src/base/DICOMDirectoryHelper.cpp
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@@ -10,6 +10,9 @@
#include <vtkNew.h> #include <vtkNew.h>
#include <unordered_map> #include <unordered_map>
#include <algorithm> #include <algorithm>
#include <vtkMath.h>
#include <vtkMatrix4x4.h>
struct DICOMTag{ struct DICOMTag{
Uint16 group; Uint16 group;
Uint16 element; Uint16 element;
@@ -70,6 +73,7 @@ void DICOMDirectoryHelper::getDirectoryProperties(const char * rootPath, DICOMFi
void DICOMDirectoryHelper::getFileProperty(const std::string &path, DICOMFileMap& result) { void DICOMDirectoryHelper::getFileProperty(const std::string &path, DICOMFileMap& result) {
DcmFileFormat file; DcmFileFormat file;
// read success!
if (file.loadFile(path).good()) { if (file.loadFile(path).good()) {
DcmDataset *dataset = file.getDataset(); DcmDataset *dataset = file.getDataset();
std::string SeriesUID; std::string SeriesUID;
@@ -80,6 +84,7 @@ void DICOMDirectoryHelper::getFileProperty(const std::string &path, DICOMFileMap
dataset->findAndGetSint32(DcmTagKey(0x0020, 0x0012), AcquisitionNumber); dataset->findAndGetSint32(DcmTagKey(0x0020, 0x0012), AcquisitionNumber);
long InstanceNumber = 0; long InstanceNumber = 0;
dataset->findAndGetSint32(DcmTagKey(0x0020, 0x0013), InstanceNumber); dataset->findAndGetSint32(DcmTagKey(0x0020, 0x0013), InstanceNumber);
// series be firstly loaded
if (!result.count(SeriesUID)) { if (!result.count(SeriesUID)) {
ExtendMedicalImageProperties *seriesProperty = ExtendMedicalImageProperties::New(); ExtendMedicalImageProperties *seriesProperty = ExtendMedicalImageProperties::New();
@@ -116,7 +121,7 @@ void DICOMDirectoryHelper::getFileProperty(const std::string &path, DICOMFileMap
dataset->findAndGetFloat64(DcmTagKey(0x0028, 0x1051), WindowWidth); dataset->findAndGetFloat64(DcmTagKey(0x0028, 0x1051), WindowWidth);
seriesProperty->AddWindowLevelPreset(WindowWidth, WindowCenter); seriesProperty->AddWindowLevelPreset(WindowWidth, WindowCenter);
double Spacing[3] = {0.0, 0.0, 0.0}; double Spacing[3] = {0.0, 0.0, 1.0};
dataset->findAndGetFloat64(DcmTagKey(0x0028, 0x0030), Spacing[0], 0); dataset->findAndGetFloat64(DcmTagKey(0x0028, 0x0030), Spacing[0], 0);
dataset->findAndGetFloat64(DcmTagKey(0x0028, 0x0030), Spacing[1], 1); dataset->findAndGetFloat64(DcmTagKey(0x0028, 0x0030), Spacing[1], 1);
seriesProperty->SetSpacing(Spacing); seriesProperty->SetSpacing(Spacing);
@@ -172,7 +177,6 @@ void DICOMDirectoryHelper::Update() {
auto files = (*iterator)->GetFileNames(); auto files = (*iterator)->GetFileNames();
std::vector<DICOMFileRefValue> vector; std::vector<DICOMFileRefValue> vector;
for (auto f : pair.second) { for (auto f : pair.second) {
// printf("%s\r\n",f.second.FilePath.c_str());
vector.emplace_back(std::move(f.second)); vector.emplace_back(std::move(f.second));
} }
std::sort(vector.begin(), vector.end(), [](const DICOMFileRefValue &v1, const DICOMFileRefValue &v2) { std::sort(vector.begin(), vector.end(), [](const DICOMFileRefValue &v1, const DICOMFileRefValue &v2) {
@@ -182,10 +186,9 @@ void DICOMDirectoryHelper::Update() {
(v1.InstanceNumber < v2.InstanceNumber)); (v1.InstanceNumber < v2.InstanceNumber));
}); });
std::for_each(vector.begin(), vector.end(),[=](auto v){ std::for_each(vector.begin(), vector.end(),[=](auto v){
// printf("%s\r\n",v.FilePath.c_str());
files->emplace_back(std::move(v.FilePath)); files->emplace_back(std::move(v.FilePath));
}); });
readImageProperty(*iterator);
} }
} }
SeriesCount = seriesProperties.size(); SeriesCount = seriesProperties.size();
@@ -215,4 +218,96 @@ void DICOMDirectoryHelper::Clear() {
SeriesCount = 0; SeriesCount = 0;
} }
void DICOMDirectoryHelper::readImageProperty(ExtendMedicalImageProperties* property) {
std::vector<std::string> *files = property->GetFileNames();
DcmFileFormat file1;
// read success!
std::cout<<files->at(0)<<std::endl;
if (file1.loadFile(files->at(0)).good()) {
DcmDataset *dataset = file1.getDataset();
std::string SeriesUID;
dataset->findAndGetOFString(DcmTagKey(0x0020, 0x000e), SeriesUID);
long SeriesNumber = 0;
dataset->findAndGetSint32(DcmTagKey(0x0020, 0x0011), SeriesNumber);
long AcquisitionNumber = 0;
dataset->findAndGetSint32(DcmTagKey(0x0020, 0x0012), AcquisitionNumber);
long InstanceNumber = 0;
dataset->findAndGetSint32(DcmTagKey(0x0020, 0x0013), InstanceNumber);
std::cout<<"file1:"<<SeriesUID<<", "<<SeriesNumber<<", "<<AcquisitionNumber<<", "<<InstanceNumber<<std::endl;
double Spacing[3] = {0.0, 0.0, -1.0};
dataset->findAndGetFloat64(DcmTagKey(0x0028, 0x0030), Spacing[0], 0);
dataset->findAndGetFloat64(DcmTagKey(0x0028, 0x0030), Spacing[1], 1);
property->SetSpacing(Spacing);
double orientation[6] = {.0, .0, .0, .0, .0, .0};
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0037), orientation[0], 0);
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0037), orientation[1], 1);
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0037), orientation[2], 2);
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0037), orientation[3], 3);
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0037), orientation[4], 4);
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0037), orientation[5], 5);
property->SetDirectionCosine(orientation);
double position[3] = {.0, .0, .0};
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0032), position[0], 0);
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0032), position[1], 1);
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0032), position[2], 2);
property->SetPosition(position);
}
double *d = property->GetDirectionCosine();
double xVector[3] = {d[0], d[1], d[2]};
double yVector[3] = {d[3], d[4], d[5]};
double zVector[3] = {0, 0, 0};
vtkMath::Cross(xVector, yVector, zVector);
auto matrix = property->GetModelToWorldMatrix();
matrix->Identity();
matrix->SetElement( 0,0, xVector[0]);
matrix->SetElement( 1,0, xVector[1]);
matrix->SetElement( 2,0, xVector[2]);
matrix->SetElement( 0,1, yVector[0]);
matrix->SetElement( 1,1, yVector[1]);
matrix->SetElement( 2,1, yVector[2]);
matrix->SetElement( 0,2, zVector[0]);
matrix->SetElement( 1,2, zVector[1]);
matrix->SetElement( 2,2, zVector[2]);
vtkMatrix4x4::Invert(matrix, property->GetWorldToModelMatrix() );
matrix = property->GetWorldToModelMatrix();
DcmFileFormat file2;
std::cout<<files->at(1)<<std::endl;
// read success!
if (file2.loadFile(files->at(1)).good()) {
DcmDataset *dataset = file2.getDataset();
std::string SeriesUID;
dataset->findAndGetOFString(DcmTagKey(0x0020, 0x000e), SeriesUID);
std::string SeriesDes;
dataset->findAndGetOFString(DcmTagKey(0x0008, 0x103e), SeriesDes);
long SeriesNumber = 0;
dataset->findAndGetSint32(DcmTagKey(0x0020, 0x0011), SeriesNumber);
long AcquisitionNumber = 0;
dataset->findAndGetSint32(DcmTagKey(0x0020, 0x0012), AcquisitionNumber);
long InstanceNumber = 0;
dataset->findAndGetSint32(DcmTagKey(0x0020, 0x0013), InstanceNumber);
double position[3] = {.0, .0, .0};
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0032), position[0], 0);
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0032), position[1], 1);
dataset->findAndGetFloat64(DcmTagKey(0x0020, 0x0032), position[2], 2);
double position0[3] ={property->GetPosition()[0], property->GetPosition()[1] , property->GetPosition()[2]};
double zNormal[4] = { position[0] - position0[0],
position[1] - position0[1],
position[2] - position0[2], 1.0};
double space2 = sqrt(vtkMath::Distance2BetweenPoints(position, property->GetPosition()));
vtkMath::Normalize(zNormal);
double Spacing[3] = {.0, .0, .0};
property->GetSpacing(Spacing);
double zNormal2[4] = {.0,.0,.0,1.0};
matrix->MultiplyPoint(zNormal, zNormal2);
Spacing[2] = zNormal2[2]<0?(-1.0*space2):space2;
property->SetSpacing(Spacing);
}
}

1
src/src/base/DICOMDirectoryHelper.h
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@@ -55,6 +55,7 @@ private:
DICOMFileMap &result); DICOMFileMap &result);
void getFileProperty(const std::string &path, DICOMFileMap &result); void getFileProperty(const std::string &path, DICOMFileMap &result);
void readImageProperty(ExtendMedicalImageProperties* property);
}; };